The way I 'break' new or very young geckos is to first include something in their enclosure with my scent. (This is also worked on my Burmese python). A sock, shirt, whatever, and preferably something they will find cuddly and attractive to hide in. They get used to the smell, and associate it with comfort, not fear.
After awhile, like Julie suggested, I introduce my hand in there in a non-threatening way (slowly, limp, turned to the side) these things will help them feel at ease. Other than that, I basically do the same as Julie.
Also, it's important to get them used to being handled so that they somewhat prepared for it when being examined and touched by a veterinarian. My geckos are all used to having their feet, face (and mouth opened), tail and belly touched. When getting your gecko used to these touches it helps if you have warm hands (they like that).
Just be patient and remember they can sense your frustration and get scared, so be calm. When the geckos show signs of stress, let them back into their enclosure and try again another day. Hope this helps!
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