You need to leave them with the mother for 3 weeks, they should be eating on their own by then. Any sooner than that and you are going to lose some if not all of them. About the group that isn't producing... how old are they? How long have you had them set up? They may be just to young, and it could be that you need a different male. I've had this happen and changed males and in no time I have pregnant mice
Sometimes if the male and females are raised up together they just don't breed, but put a strange male in there and he's like a kid in a candy shop!
Hope this helps.